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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21049871_21049960_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21049871 - 21049960
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTAAAACT
Flanking Amino Acid:
SLPFDGQNLKELRERVLRGK
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
75.7
36.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
38.9
-1.2
3.6
54.8
49.4
Minor BPS
52.6
0.16
1.9
75.66
41.6

Associated Gene:

Gene:
MARK1
Ensembl Gene ID:
ENSAPLG00000005705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045016
21013554 - 21068564
55011
ENSAPLT00000027596
21013554 - 21068564
55011
ENSAPLT00000005968
21013554 - 21068564
55011