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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21053305_21053889_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21053305 - 21053889
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
ATGTCCCTAACT
Flanking Amino Acid:
EPDFNDTKRIDIMVTMGFSR
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
77.8
0.63
0.8
69.8
36
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
73.1
0.8
1.7
87.47
37.6

Associated Gene:

Gene:
MARK1
Ensembl Gene ID:
ENSAPLG00000005705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005968
21013554 - 21068564
55011
ENSAPLT00000045016
21013554 - 21068564
55011
ENSAPLT00000027596
21013554 - 21068564
55011