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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21056525_21059708_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21056525 - 21059708
Intron Length:
3184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
AATTTTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGGTCTTAATT
Flanking Amino Acid:
ERKKSTTVPSNNVFSGSGMT
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.7
36.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79
0.65
0.8
70.9
40
Minor 5ss
33.8
-1.8
3.4
44.3
43.6
Minor BPS
72.8
0.79
1.3
82.85
39.2

Associated Gene:

Gene:
MARK1
Ensembl Gene ID:
ENSAPLG00000005705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045016
21013554 - 21068564
55011
ENSAPLT00000027596
21013554 - 21068564
55011
ENSAPLT00000005968
21013554 - 21068564
55011