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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21062125_21062993_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21062125 - 21062993
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGAT
5'SS Class:
major
3'SS Sequence:
GTTTTCCCAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
IKDGTEAYRPSATQRVPAAS
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.1
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76
0.59
0.9
71.6
34.2
Minor 5ss
37.6
-1.4
3.5
55.7
48.5
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
MARK1
Ensembl Gene ID:
ENSAPLG00000005705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027596
21013554 - 21068564
55011
ENSAPLT00000005968
21013554 - 21068564
55011