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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21062125_21066057_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21062125 - 21066057
Intron Length:
3933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGAT
5'SS Class:
major
3'SS Sequence:
ACTTTGTTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCAACCTTAACT
Flanking Amino Acid:
IKDGTEAYRPRDPSEGEASG
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.1
35.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
61.6
0.26
1.7
73.1
41.5
Minor 5ss
37.6
-1.4
3.5
55.7
48.5
Minor BPS
79.1
0.99
1.2
85.9
39.9

Associated Gene:

Gene:
MARK1
Ensembl Gene ID:
ENSAPLG00000005705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045016
21013554 - 21068564
55011