About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2123679_2132073_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2123679 - 2132073
Intron Length:
8395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TAACGTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTTTAACG
Flanking Amino Acid:
NEETEMSEETGLEQKGQLPS
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
64.2
0.32
1.1
63.2
41.7
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
76.2
0.68
1.2
75.56
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012517
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013047
1909148 - 2191866
282719