About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21242005_21262745_R

Intron Information:

Intron Rank:
150530
Intron Class:
major
Intron Phase:
Intron Coordinates:
21242005 - 21262745
Intron Length:
20741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTATACTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78.9
0.65
0.8
73.4
36.6
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
63.3
0.4
1.7
73.99
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028466
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034105
21239933 - 21279551
39619