About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21276618_21284863_R

Intron Information:

Intron Rank:
150534
Intron Class:
major
Intron Phase:
Intron Coordinates:
21276618 - 21284863
Intron Length:
8246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGCC
5'SS Class:
major
3'SS Sequence:
CATTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
AAAGGTTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
67
36.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
81.3
0.7
0.8
77.6
30.8
Minor 5ss
36.4
-1.5
2.9
45.4
42.7
Minor BPS
46.3
-0.2
1.9
61.19
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028466
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042523
21262196 - 21285654
23459