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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2132155_2144463_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2132155 - 2144463
Intron Length:
12309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGCATCATAACT
Flanking Amino Acid:
QPEDMQDNAEGGNSTEEKQN
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
72.7
0.51
1
69.7
36.8
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
58
0.33
1.7
74.22
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012517
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013047
1909148 - 2191866
282719