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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21399943_21409217_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
21399943 - 21409217
Intron Length:
9275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TGGTCTCTAACC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
59.9
41.6
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
76.9
0.6
0.7
68.7
31.7
Minor 5ss
35
-1.7
3.3
38
46.8
Minor BPS
63.2
0.39
1.7
71.8
39.3

Associated Gene:

Gene:
DUSP10
Ensembl Gene ID:
ENSAPLG00000006427
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006658
21399565 - 21419000
19436