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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21399943_21418160_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21399943 - 21418160
Intron Length:
18218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCCC
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TGGTCTCTAACC
Flanking Amino Acid:
REGKEPLVLKGGLSGFRQNH
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
60.6
44.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
76.9
0.6
0.7
68.7
31.7
Minor 5ss
44.7
-0.6
2.9
60.8
43.7
Minor BPS
63.2
0.39
1.7
71.8
39.3

Associated Gene:

Gene:
DUSP10
Ensembl Gene ID:
ENSAPLG00000006427
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022421
21395177 - 21419897
24721