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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21409326_21418160_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21409326 - 21418160
Intron Length:
8835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCCC
5'SS Class:
major
3'SS Sequence:
GTTTCTGATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TACACATTAATG
Flanking Amino Acid:
REGKEPLVLKEEQWFGLEKS
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
60.6
44.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75.3
0.57
1
69.9
40.6
Minor 5ss
44.7
-0.6
2.9
60.8
43.7
Minor BPS
55.1
0.02
1.7
58.66
42.9

Associated Gene:

Gene:
DUSP10
Ensembl Gene ID:
ENSAPLG00000006427
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037981
21409218 - 21419897
10680
ENSAPLT00000031887
21409074 - 21419897
10824
ENSAPLT00000006658
21399565 - 21419000
19436