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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21418070_21418160_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21418070 - 21418160
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCCC
5'SS Class:
major
3'SS Sequence:
TATTTATCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GGCTATTTATCT
Flanking Amino Acid:
REGKEPLVLKGRAVCLEWHT
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
60.6
44.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.1
0.65
0.8
71.3
39.5
Minor 5ss
44.7
-0.6
2.9
60.8
43.7
Minor BPS
49.9
0.07
1.8
66.29
44.2

Associated Gene:

Gene:
DUSP10
Ensembl Gene ID:
ENSAPLG00000006427
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028021
21414351 - 21419000
4650