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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21419001_21419113_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
21419001 - 21419113
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTGATG
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTTCTTCTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
68
42.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
42
-0.9
3.1
57
47.4
Minor BPS
46
-0.2
3.6
82.89
39.2

Associated Gene:

Gene:
DUSP10
Ensembl Gene ID:
ENSAPLG00000006427
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037981
21409218 - 21419897
10680