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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2147980_2157519_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2147980 - 2157519
Intron Length:
9540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGATT
5'SS Class:
major
3'SS Sequence:
GCTGTTTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGACAT
U12 Branch Point Sequence:
CGCTGCAGGACA
Flanking Amino Acid:
SEATEPCEDKDSLKDSKGAQ
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
76
39.4
Major BPS
47.5
-0.1
1.3
52.5
43.3
Major PPT
75.7
0.58
0.9
72.9
37.4
Minor 5ss
36.5
-1.5
3.6
57
47.3
Minor BPS
41
-0.7
2.1
48.66
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012517
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013047
1909148 - 2191866
282719