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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21659217_21660395_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21659217 - 21660395
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGTAT
5'SS Class:
major
3'SS Sequence:
CACTTCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
FIISFAEDEAGELYFLSTSY
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
74.1
32
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69
0.43
0.9
66.7
34.2
Minor 5ss
32.3
-2
3.4
45.9
49.3
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
HHIPL2
Ensembl Gene ID:
ENSAPLG00000006071
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006302
21653662 - 21668660
14999