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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21660542_21660882_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21660542 - 21660882
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACACAA
5'SS Class:
major
3'SS Sequence:
TACTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
ATAACCAAAACA
Flanking Amino Acid:
GLYIFGDFMNGRLMALQEDE
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
58.7
42.2
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
83.6
0.76
0.8
77.1
36.8
Minor 5ss
36.4
-1.5
3.1
39.5
45.9
Minor BPS
49.3
-0
2
64.87
40.8

Associated Gene:

Gene:
HHIPL2
Ensembl Gene ID:
ENSAPLG00000006071
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006302
21653662 - 21668660
14999