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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21661010_21661933_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21661010 - 21661933
Intron Length:
924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTGTTTAACA
Flanking Amino Acid:
DTKLCRNSSLDDILPIFAYG
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
74.9
37
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.7
0.69
0.9
76.7
36.2
Minor 5ss
31.1
-2.2
3.1
31.2
42.7
Minor BPS
69.3
0.6
1.8
78.6
38.6

Associated Gene:

Gene:
HHIPL2
Ensembl Gene ID:
ENSAPLG00000006071
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006302
21653662 - 21668660
14999