About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21662266_21662640_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21662266 - 21662640
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CTGTCTTTATCT
Flanking Amino Acid:
PFGKFGNAQNKSVLLGKVLR
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.6
0.64
0.8
78
30.8
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
66.6
0.6
1.6
79.17
43.6

Associated Gene:

Gene:
HHIPL2
Ensembl Gene ID:
ENSAPLG00000006071
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006302
21653662 - 21668660
14999