Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21676459_21677689_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21676459 - 21677689

Intron Length:

1231

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

AATCTCTTCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

AATTCATTAATT

Flanking Amino Acid:

IDFNIMLQKSKKRKKRRLGL

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

84.6

33.2

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

0.56

0.9

39.9

Minor 5ss

41.9

-0.9

3.1

59.6

38.8

Minor BPS

73.1

0.8

1.5

85.27

34.3

Associated Gene:

Gene:

TAF1A

Ensembl Gene ID:

ENSAPLG00000006303

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006540

21673087 - 21684217

11131