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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21678793_21679659_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21678793 - 21679659
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGAGCA
5'SS Class:
major
3'SS Sequence:
TAACTTCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
ATGAACTTAACT
Flanking Amino Acid:
WDLFVKSYVDLLEFYGDHQE
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
70.8
33
Major BPS
76.8
0.67
1
66
40.9
Major PPT
75.4
0.57
0.9
70.2
35.8
Minor 5ss
33.1
-1.9
3.4
44.3
43.3
Minor BPS
68.1
0.65
1.6
80.61
40.6

Associated Gene:

Gene:
TAF1A
Ensembl Gene ID:
ENSAPLG00000006303
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006540
21673087 - 21684217
11131