About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21680791_21682048_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21680791 - 21682048
Intron Length:
1258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ACTGTTTGAATT
Flanking Amino Acid:
KTLGVKRYLKVCLEHAFHLL
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
74.9
0.56
1
67.2
42.8
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
51.8
0.13
1.5
65.89
39.8

Associated Gene:

Gene:
TAF1A
Ensembl Gene ID:
ENSAPLG00000006303
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006540
21673087 - 21684217
11131