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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21682163_21682976_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21682163 - 21682976
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTGAATC
Flanking Amino Acid:
YSVEYMGPSEIIWRVGTEIL
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
75.3
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87
0.83
0.7
80.6
31.4
Minor 5ss
34.5
-1.8
2.8
42.1
44.5
Minor BPS
64.1
0.42
1.3
71.42
33.7

Associated Gene:

Gene:
TAF1A
Ensembl Gene ID:
ENSAPLG00000006303
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006540
21673087 - 21684217
11131