About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21687315_21687860_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21687315 - 21687860
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTCTCCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CCAACACTAACT
Flanking Amino Acid:
RKRCADPECSMLMCRGKAMK
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1
60.7
38.7
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
86.8
0.83
0.7
81
24.3
Minor 5ss
29.8
-2.3
3.2
40.1
40
Minor BPS
47.2
-0.1
2
63.75
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017190
21687155 - 21712979
25825
ENSAPLT00000037742
21687155 - 21712979
25825
ENSAPLT00000006603
21687155 - 21712979
25825
ENSAPLT00000024054
21687155 - 21712979
25825
ENSAPLT00000048105
21686681 - 21712979
26299
ENSAPLT00000023079
21686681 - 21713555
26875
ENSAPLT00000048019
21687155 - 21712979
25825
ENSAPLT00000017285
21687155 - 21712979
25825
ENSAPLT00000039633
21686681 - 21713555
26875