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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21693174_21694135_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21693174 - 21694135
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTCATT
Flanking Amino Acid:
TNEELELPTDETDFVCFDGG
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
61.3
0.44
1.7
79.64
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017190
21687155 - 21712979
25825
ENSAPLT00000037742
21687155 - 21712979
25825
ENSAPLT00000006603
21687155 - 21712979
25825
ENSAPLT00000024054
21687155 - 21712979
25825
ENSAPLT00000048105
21686681 - 21712979
26299
ENSAPLT00000023079
21686681 - 21713555
26875
ENSAPLT00000048019
21687155 - 21712979
25825
ENSAPLT00000017285
21687155 - 21712979
25825
ENSAPLT00000039633
21686681 - 21713555
26875