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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21694226_21694321_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
21694226 - 21694321
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATA|GCAAATGAG
5'SS Class:
weak_major
3'SS Sequence:
TGATACAGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TGATACAGTACA
Flanking Amino Acid:
ELLKSSKETISLDALEADNV
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.24
1.3
58.7
43.1
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
62.7
0.29
1.1
54.9
44.2
Minor 5ss
22.9
-3.1
4
32
37.8
Minor BPS
42.4
-0.6
2.1
56.55
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006603
21687155 - 21712979
25825