Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21697107_21699780_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

21697107 - 21699780

Intron Length:

2674

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGATGT

5'SS Class:

strong_major

3'SS Sequence:

AAAATGCACGGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACAAAAT

U12 Branch Point Sequence:

CCGTCACAAAAT

Flanking Amino Acid:

EQEDDQLNAQEPRPSPAGGG

Intron Amino Acid Position:

1075

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

72.5

39.9

Major BPS

49.7

-0

1.1

55.6

Major PPT

42.4

-0.4

1.7

36.6

39.6

Minor 5ss

38.3

-1.3

3.4

56.2

Minor BPS

40.2

-0.6

2.2

54.69

46.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006319

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048019

21687155 - 21712979

25825

ENSAPLT00000037742

21687155 - 21712979

25825