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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21698445_21700021_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21698445 - 21700021
Intron Length:
1577

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATA|GCAAGATTT
5'SS Class:
major
3'SS Sequence:
AATTGGTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCAATGTTAATT
Flanking Amino Acid:
IQPCSSYRQILVATLPEDIR
Intron Amino Acid Position:
1131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.3
69
41.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70.7
0.47
1
66.6
44.2
Minor 5ss
35.4
-1.7
4.3
58
41.7
Minor BPS
50.2
0.08
2.1
68.64
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024054
21687155 - 21712979
25825