About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21699088_21700021_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21699088 - 21700021
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCTTTGC
5'SS Class:
major
3'SS Sequence:
AATTGGTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCAATGTTAATT
Flanking Amino Acid:
SLAVLRSPLMLVATLPEDIR
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.3
1.1
54.9
39
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70.7
0.47
1
66.6
44.2
Minor 5ss
34.2
-1.8
3
41.3
40.2
Minor BPS
50.2
0.08
2.1
68.64
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021287
21699019 - 21712979
13961