Gene Search

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

21703516 - 21703668

Intron Length:

153

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCATTC

5'SS Class:

weak_major

3'SS Sequence:

TTCTTGTGCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAG

U12 Branch Point Sequence:

GTTTGCTCAGTT

Flanking Amino Acid:

LDKMSEYDEKIKQAKESVKA

Intron Amino Acid Position:

1066

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.2

68.6

37.4

Major BPS

55.8

0.14

1.6

65.3

43.7

Major PPT

72.8

0.51

0.9

72.7

37.5

Minor 5ss

64.5

0.49

2.3

76.7

38.8

Minor BPS

48.7

-0

2.2

73.07

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006319

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017285

21687155 - 21712979

25825

ENSAPLT00000037742

21687155 - 21712979

25825

ENSAPLT00000048105

21686681 - 21712979

26299

ENSAPLT00000017190

21687155 - 21712979

25825

ENSAPLT00000024054

21687155 - 21712979

25825

ENSAPLT00000048019

21687155 - 21712979

25825

ENSAPLT00000006603

21687155 - 21712979

25825

ENSAPLT00000023079

21686681 - 21713555

26875

ENSAPLT00000021287

21699019 - 21712979

13961

ENSAPLT00000039633

21686681 - 21713555

26875

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21703516_21703668_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: