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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21703747_21703842_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21703747 - 21703842
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TATTTTGTACCC
Flanking Amino Acid:
ILSDETAGLKDTVKGLEEAN
Intron Amino Acid Position:
1092

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
87.8
0.85
0.7
84.9
29.9
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
48.4
-0.1
2.2
66.28
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017285
21687155 - 21712979
25825
ENSAPLT00000037742
21687155 - 21712979
25825
ENSAPLT00000006603
21687155 - 21712979
25825
ENSAPLT00000024054
21687155 - 21712979
25825
ENSAPLT00000048105
21686681 - 21712979
26299
ENSAPLT00000023079
21686681 - 21713555
26875
ENSAPLT00000048019
21687155 - 21712979
25825
ENSAPLT00000021287
21699019 - 21712979
13961
ENSAPLT00000039633
21686681 - 21713555
26875