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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21703954_21704758_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21703954 - 21704758
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCTTCTTGTATA
Flanking Amino Acid:
RKQNEKKQKKISENQKSLEK
Intron Amino Acid Position:
1488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
79.5
0.66
0.8
76
32.6
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
53.8
0.11
1.8
67.43
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048105
21686681 - 21712979
26299
ENSAPLT00000039633
21686681 - 21713555
26875
ENSAPLT00000023079
21686681 - 21713555
26875