Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21705507 - 21706257

Intron Length:

751

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

GTGTTTCATACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

TGTTTCATACAG

Flanking Amino Acid:

NARLKKSKEQLLKEAEGWSE

Intron Amino Acid Position:

1174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

84.2

27.2

Major BPS

73.8

0.59

0.9

26.8

Major PPT

75.5

0.57

69.6

40.8

Minor 5ss

44.5

-0.6

2.8

38.4

Minor BPS

46.9

-0.3

58.06

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006319

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017190

21687155 - 21712979

25825

ENSAPLT00000024054

21687155 - 21712979

25825

ENSAPLT00000048105

21686681 - 21712979

26299

ENSAPLT00000006603

21687155 - 21712979

25825

ENSAPLT00000023079

21686681 - 21713555

26875

ENSAPLT00000048019

21687155 - 21712979

25825

ENSAPLT00000021287

21699019 - 21712979

13961

ENSAPLT00000039633

21686681 - 21713555

26875

ENSAPLT00000017285

21687155 - 21712979

25825

ENSAPLT00000037742

21687155 - 21712979

25825

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21705507_21706257_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: