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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21706381_21706486_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21706381 - 21706486
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
TTTTCCTTCAGT
Flanking Amino Acid:
ALAYKENEIEVLTNCIMQLK
Intron Amino Acid Position:
1215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
33.4
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
69.8
0.45
1
63.6
42.2
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
70.7
0.73
2
91.67
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023079
21686681 - 21713555
26875
ENSAPLT00000017285
21687155 - 21712979
25825
ENSAPLT00000006603
21687155 - 21712979
25825
ENSAPLT00000048105
21686681 - 21712979
26299
ENSAPLT00000039633
21686681 - 21713555
26875