About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21706611_21707448_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21706611 - 21707448
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TTTTATCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATCT
Flanking Amino Acid:
GDDLANGELPDNENEKMKTQ
Intron Amino Acid Position:
1629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.2
0.79
0.7
78.1
36.1
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
68.7
0.67
1.5
84.06
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048105
21686681 - 21712979
26299
ENSAPLT00000039633
21686681 - 21713555
26875
ENSAPLT00000023079
21686681 - 21713555
26875