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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21707655_21707747_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
21707655 - 21707747
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACA|GCAAGACAT
5'SS Class:
major
3'SS Sequence:
CAGAACACTTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TGTAGTTTAAAA
Flanking Amino Acid:
LQSKLSDEVTWHNKQIKKLE
Intron Amino Acid Position:
1419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.4
59.5
45
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
48.9
-0
1.1
46.8
39.9
Minor 5ss
25.5
-2.8
4.1
45
43.6
Minor BPS
52.2
0.07
1.9
66.12
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017285
21687155 - 21712979
25825