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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21707674_21707811_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21707674 - 21707811
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTCCTTTCAACT
Flanking Amino Acid:
DEVTARHELEEQIKKLEHDS
Intron Amino Acid Position:
1678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.8
43.8
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
72.9
0.52
1
68.4
37.5
Minor 5ss
28.3
-2.5
2.8
32.9
42.1
Minor BPS
61
0.42
1.5
76.97
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039633
21686681 - 21713555
26875
ENSAPLT00000037742
21687155 - 21712979
25825
ENSAPLT00000023079
21686681 - 21713555
26875
ENSAPLT00000048105
21686681 - 21712979
26299