Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21707951 - 21709570

Intron Length:

1620

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGCCTT

5'SS Class:

strong_major

3'SS Sequence:

TTCCCCTATGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAG

U12 Branch Point Sequence:

TTTCCCCTATGT

Flanking Amino Acid:

LYQQKEMALQKKLTQEEYER

Intron Amino Acid Position:

1360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

75.5

40.6

Major BPS

60.8

0.27

1.6

71.4

45.1

Major PPT

0.54

0.8

69.9

29.8

Minor 5ss

45.5

-0.5

3.1

65.9

39.3

Minor BPS

49.6

0.05

2.2

78.34

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006319

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017190

21687155 - 21712979

25825

ENSAPLT00000024054

21687155 - 21712979

25825

ENSAPLT00000048105

21686681 - 21712979

26299

ENSAPLT00000006603

21687155 - 21712979

25825

ENSAPLT00000023079

21686681 - 21713555

26875

ENSAPLT00000048019

21687155 - 21712979

25825

ENSAPLT00000021287

21699019 - 21712979

13961

ENSAPLT00000039633

21686681 - 21713555

26875

ENSAPLT00000017285

21687155 - 21712979

25825

ENSAPLT00000037742

21687155 - 21712979

25825

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21707951_21709570_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: