Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21709673 - 21709758

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAACTTAT

5'SS Class:

major

3'SS Sequence:

TCCTTTTATACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTCCTTTTATA

Flanking Amino Acid:

VLAIEEVKVYKQRIQDMEEE

Intron Amino Acid Position:

1394

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.2

77.7

33.3

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

83.8

0.76

0.8

79.6

31.4

Minor 5ss

49.1

-0.1

2.6

66.9

38.4

Minor BPS

65.1

0.47

1.6

76.51

34.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006319

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021287

21699019 - 21712979

13961

ENSAPLT00000039633

21686681 - 21713555

26875

ENSAPLT00000017285

21687155 - 21712979

25825

ENSAPLT00000037742

21687155 - 21712979

25825

ENSAPLT00000017190

21687155 - 21712979

25825

ENSAPLT00000024054

21687155 - 21712979

25825

ENSAPLT00000048105

21686681 - 21712979

26299

ENSAPLT00000006603

21687155 - 21712979

25825

ENSAPLT00000023079

21686681 - 21713555

26875

ENSAPLT00000048019

21687155 - 21712979

25825

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21709673_21709758_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: