Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21709820 - 21709938

Intron Length:

119

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATGAC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTTTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

AGCTAATAAAAT

Flanking Amino Acid:

QKTERSYKNQIAAHEKKAHD

Intron Amino Acid Position:

1415

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

78.2

29.5

Major BPS

70.8

0.52

70.6

31.6

Major PPT

91.8

0.94

0.6

91.6

19.6

Minor 5ss

32.3

-2

3.3

42.9

44.7

Minor BPS

42.9

-0.4

2.1

58.89

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006319

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017190

21687155 - 21712979

25825

ENSAPLT00000024054

21687155 - 21712979

25825

ENSAPLT00000048105

21686681 - 21712979

26299

ENSAPLT00000006603

21687155 - 21712979

25825

ENSAPLT00000023079

21686681 - 21713555

26875

ENSAPLT00000048019

21687155 - 21712979

25825

ENSAPLT00000021287

21699019 - 21712979

13961

ENSAPLT00000039633

21686681 - 21713555

26875

ENSAPLT00000017285

21687155 - 21712979

25825

ENSAPLT00000037742

21687155 - 21712979

25825

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21709820_21709938_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: