Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21709975 - 21710070

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGAATG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCCTCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTAAT

U12 Branch Point Sequence:

TTTTCCCTCACA

Flanking Amino Acid:

AHEKKAHDNWLIARSAERAL

Intron Amino Acid Position:

1427

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

75.5

40.6

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

85.8

0.8

0.7

80.5

24.9

Minor 5ss

36.6

-1.5

41.4

44.7

Minor BPS

0.5

2.1

84.22

35.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006319

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017285

21687155 - 21712979

25825

ENSAPLT00000037742

21687155 - 21712979

25825

ENSAPLT00000017190

21687155 - 21712979

25825

ENSAPLT00000024054

21687155 - 21712979

25825

ENSAPLT00000048105

21686681 - 21712979

26299

ENSAPLT00000006603

21687155 - 21712979

25825

ENSAPLT00000023079

21686681 - 21713555

26875

ENSAPLT00000048019

21687155 - 21712979

25825

ENSAPLT00000021287

21699019 - 21712979

13961

ENSAPLT00000039633

21686681 - 21713555

26875

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21709975_21710070_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: