Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21710520 - 21710642

Intron Length:

123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATGCT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTGATGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATTTCTTGATG

Flanking Amino Acid:

RPDRQVPPRRGPLSRDGSFG

Intron Amino Acid Position:

1482

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

81.2

30.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

77.2

0.61

0.9

73.9

35.8

Minor 5ss

34.7

-1.7

3.3

50.4

Minor BPS

70.7

0.51

1.2

70.64

36.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006319

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017190

21687155 - 21712979

25825

ENSAPLT00000024054

21687155 - 21712979

25825

ENSAPLT00000048105

21686681 - 21712979

26299

ENSAPLT00000006603

21687155 - 21712979

25825

ENSAPLT00000023079

21686681 - 21713555

26875

ENSAPLT00000048019

21687155 - 21712979

25825

ENSAPLT00000021287

21699019 - 21712979

13961

ENSAPLT00000039633

21686681 - 21713555

26875

ENSAPLT00000017285

21687155 - 21712979

25825

ENSAPLT00000037742

21687155 - 21712979

25825

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21710520_21710642_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: