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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21711017_21711143_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21711017 - 21711143
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
ATCACTAAAACA
Flanking Amino Acid:
PEIPGRMSVPDLGPAVASLI
Intron Amino Acid Position:
1913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
79.2
0.66
0.8
72.3
32.5
Minor 5ss
45.7
-0.5
2.9
61.3
44.6
Minor BPS
46.6
-0.2
1.9
59.09
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048105
21686681 - 21712979
26299
ENSAPLT00000039633
21686681 - 21713555
26875
ENSAPLT00000023079
21686681 - 21713555
26875