Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21711221_21711378_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

21711221 - 21711378

Intron Length:

158

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGCTGA

5'SS Class:

major

3'SS Sequence:

TCACCAAAAAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCTTAT

U12 Branch Point Sequence:

CCACCCTCACCA

Flanking Amino Acid:

SSPSTAMDRAQPSPKESEAP

Intron Amino Acid Position:

1939

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

66.3

42.1

Major BPS

78.8

0.72

67.9

40.1

Major PPT

47.4

-0.1

1.1

43.4

34.2

Minor 5ss

43.7

-0.7

2.9

56.3

47.9

Minor BPS

46.9

-0.2

1.9

53.78

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006319

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039633

21686681 - 21713555

26875