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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21712262_21712650_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21712262 - 21712650
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAATTG
5'SS Class:
major
3'SS Sequence:
CCTTTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TAAGCTTTAATT
Flanking Amino Acid:
FGPRPLPVPLVRGAPLPPPA
Intron Amino Acid Position:
1616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
66
40.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
81.1
0.7
0.7
73.4
31.6
Minor 5ss
39.8
-1.1
3.4
55.8
48.4
Minor BPS
69.2
0.68
1.3
77.68
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039633
21686681 - 21713555
26875
ENSAPLT00000023079
21686681 - 21713555
26875
ENSAPLT00000006603
21687155 - 21712979
25825
ENSAPLT00000048105
21686681 - 21712979
26299