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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21726820_21727253_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21726820 - 21727253
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TCATATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATTT
Flanking Amino Acid:
FPFDVQPVPLRKILAPGEEE
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
77.6
0.62
0.9
71.9
37.5
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
61
0.42
1.8
84.33
36.6

Associated Gene:

Gene:
AIDA
Ensembl Gene ID:
ENSAPLG00000006905
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045580
21716899 - 21739823
22925
ENSAPLT00000020436
21716899 - 21739823
22925
ENSAPLT00000007195
21716899 - 21741346
24448