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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21732988_21733067_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21732988 - 21733067
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTTC
5'SS Class:
major
3'SS Sequence:
TTTGTGTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGGTTTTAGACA
Flanking Amino Acid:
MLGTEKCSFTGIAKASGNRT
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
68.9
36.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84
0.77
0.8
81.3
36.4
Minor 5ss
46.7
-0.3
3.2
66.9
44.7
Minor BPS
50.5
0.01
1.7
61.65
39.1

Associated Gene:

Gene:
AIDA
Ensembl Gene ID:
ENSAPLG00000006905
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007195
21716899 - 21741346
24448