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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21739639_21741084_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
21739639 - 21741084
Intron Length:
1446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGTGTGGT
5'SS Class:
major
3'SS Sequence:
CCCCTTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CACTCTTCGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
64.9
41.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
75.6
0.58
0.7
67.8
32.2
Minor 5ss
34.6
-1.8
3.2
40.1
46
Minor BPS
50.5
0.1
1.6
63.31
41.8

Associated Gene:

Gene:
AIDA
Ensembl Gene ID:
ENSAPLG00000006905
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007195
21716899 - 21741346
24448