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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21747168_21747521_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21747168 - 21747521
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTAAAA
5'SS Class:
major
3'SS Sequence:
GCTTTATGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAAACCTAAACT
Flanking Amino Acid:
IAAGIFKHLKESHIPKLITP
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
69.7
36.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
67.3
0.39
1
66
39.9
Minor 5ss
31.5
-2.1
3.1
39.8
45.8
Minor BPS
65
0.55
1.7
79.26
42.1

Associated Gene:

Gene:
BROX
Ensembl Gene ID:
ENSAPLG00000030078
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017529
21745369 - 21758232
12864