Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21750432_21753818_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21750432 - 21753818

Intron Length:

3387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTTGCAAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATTACGT

Flanking Amino Acid:

AIRSLQESEKFFAKAEALCK

Intron Amino Acid Position:

209

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

78.2

36.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

67.8

0.4

1.1

34.3

Minor 5ss

38.7

-1.3

3.4

53.8

43.6

Minor BPS

52.9

0.17

2.1

80.31

41.8

Associated Gene:

Gene:

BROX

Ensembl Gene ID:

ENSAPLG00000030078

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017529

21745369 - 21758232

12864